Cemre Kefeli, Andrés Aravena “Machine learning analysis on transcriptomic data reveals novel target genes of the WNT/β-catenin pathway in colorectal cancer”. Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM 2022), Rennes, France, July 2022
Cemre Kefeli, Andrés Aravena “Machine learning analysis on transcriptomic data reveals novel target genes of the WNT/β-catenin pathway in colorectal cancer”. 8th International Congress of the Molecular Biology Association of Turkey (MolBiyoKon’22), Istanbul, Turkey, June 2022
Cemre Kefeli, Andrés Aravena “Novel targets of the WNT/β-catenin pathway discovered using gene expression data mining”. 5th International Symposium on Bioinformatics (InSyB2021), Istanbul, Turkey, December 2021
Emrah Kırdök, Andrés Aravena “Predicting oral health using machine learning”. 14th International Symposium on Health Informatics and Bioinformatics (HIBIT), Ankara, Turkey, September 2021
Atakan Ayden, Elif Yılmaz, Bilge G. Tuna, Ayşegul Kuskucu, Ömer F. Bayrak, Andrés Aravena and Soner Doǧan “Identification of autophagy-related miRNA–mRNA regulatory network in calorie-restricted mouse brain”. 14th International Symposium on Health Informatics and Bioinformatics (HIBIT), Ankara, Turkey, September 2021
Faruk Üstünel, Terje Steinum, Andrés Aravena “Evolutionary perspective to untangle DNA sequence organization of a multi-drug resistant plasmid”. 12th International Symposium on Health Informatics and Bioinformatics (HIBIT), Izmir, Turkey, October 2019
Emrah Kırdök, Andrés Aravena “Using metagenomics and machine-learning to understand the oral health”. 12th International Symposium on Health Informatics and Bioinformatics (HIBIT), Izmir, Turkey, October 2019
Emrah Kırdök, Andrés Aravena, Macha Nikolski “Authentication of ancient DNA sequences when there is no reference genome”. 5th Ecology and Evolutionary Biology Symposium, Izmir, Turkey, July 2018
Emrah Kırdök, Andrés Aravena “Assigning taxonomy without a reference sequence”. 4th Ecology and Evolutionary Biology Symposium, Istanbul, Turkey, July 2017
Emrah Kırdök, A. Aravena “Assessment of taxonomic binning methods on ancient DNA metagenomic samples”. 3rd Ecology and Evolutionary Biology Symposium, Ankara, Turkey, August 2016
Andrés Aravena “Mathematics, probabilities and statistics in ecology and evolution.”. Computational Ecology and Evolution Workshop, Nesin Foundation Mathematics Village of Şirince, Turkey, September 2016
Emrah Kırdök, Andrés Aravena “Assessment of taxonomic binning methods on ancient DNA metagenomic samples”. International Conference on Systems Biology, Barcelona, Spain, September 2016
V. Acuña, A. Aravena, A. Maass, A. Siegel “Modeling parsimonious putative regulatory networks: Complexity and heuristic approach.”. Verification, Model Checking, and Abstract Interpretation, San Diego, California, USA, January 2014
A. Aravena, D. Eveillard, A. Maass, A. Siegel “A logics-based integrative approach to decipher putative regulatory relationships inferred from genomic and transcriptomic data.”. STATSEQ meeting on Gene Network Inference with Systems genetic data and beyond, Paris, France, March 2013
T. Tapia, A. Aravena, C. Alvarez, V. Cornejo, W. Fernandez, M. Camus, A. Maass, P. Carvallo “BRCA1 expression and genomic aberrations in triple negative breast tumors.”. American Association for Cancer Research (AACR), Annual Meeting 2013, Washington DC, USA, April 2013
A. Aravena, C. Guziolowski, A. Siegel, A. Maass “Using Mutual Information and Answer Set Programming to refine PWM based transcription regulation network.”. Actes 13th Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM) 2012, Rennes, France, June 2012
C. Alvarez, T. Tapia, V. Cornejo, A. Aravena, W. Fernandez, M. Alvarez, M. Camus, A. Maass, P. Carvallo “Array CGH genomic profile of hereditary breast cancer tumors. Identification of suppressor genes in deleted regions, determination of promoter hypermethylation and their protein expression in tumor biopsies.”. Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research, Chicago, IL, USA, April 2012
A. Aravena, A. Maass, “ProbeMaker: a Tool for Simple Description and Parallelization of Bioinformatics Pipelines.”. The 12th International Conference on Systems Biology, Heidelberg/Mannheim, Germany, August 2011
A. Colombo, M. Mione, I. Signore, F. Olivares, R. Pérez, M. Gonzalez, A. Aravena, S. Wilson, M. Concha “Identification of genes with asymmetric expression in the zebrafish brain.”. Mechanisms of Development 126 (2009): S186. 11-P008, , , 2009
N. Loira, A. Aravena “Bioinformatics in Biomining.”. Gelato ICE: Itanium Conference & Expo, San Jose, CA, USA, April 2006