December 17, 2018
Replicating a paper
Previously published in BioRxiv
Supplementary material
Figures: https://www.biorxiv.org/content/biorxiv/suppl/ 2015/11/25/032870.DC1/032870-1.pdf
Data (in text format): NaCl-elutions.txt, animals.txt, capture-experiments.txt, fecal-captures.txt, libraries.txt, spike-in-DNA.txt
Your Job: Write the code to produce the same figures
Create a new Rmarkdown document, make at least figure 1 and 2, and send it to andres.aravena+cmb@istanbul.edu.tr
Figure 1
Figure 2
see next slide
Note about Figure 2
This figure does not match the data
You have to use only samples where
PctEndogenous_fDNA<10
Figure 6
Figure 9a
